Package: PVAClone 0.1-7

PVAClone: Population Viability Analysis with Data Cloning

Likelihood based population viability analysis in the presence of observation error and missing data. The package can be used to fit, compare, predict, and forecast various growth model types using data cloning.

Authors:Khurram Nadeem [aut], Peter Solymos [cre, aut]

PVAClone_0.1-7.tar.gz
PVAClone_0.1-7.zip(r-4.5)PVAClone_0.1-7.zip(r-4.4)PVAClone_0.1-7.zip(r-4.3)
PVAClone_0.1-7.tgz(r-4.4-any)PVAClone_0.1-7.tgz(r-4.3-any)
PVAClone_0.1-7.tar.gz(r-4.5-noble)PVAClone_0.1-7.tar.gz(r-4.4-noble)
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PVAClone.pdf |PVAClone.html✨
PVAClone/json (API)

# Install 'PVAClone' in R:

install.packages('PVAClone', repos = c('https://psolymos.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/psolymos/pvaclone/issues

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC
c++– GNU Standard C++ Library v3

Datasets:

paurelia - Paramecium abundance time series
redstart - Abundance time series of American Redstart
songsparrow - Abundance time series of Song Sparrow

On CRAN:

17 exports 1 stars 0.95 score 58 dependencies 23 scripts 475 downloads

Last updated 4 months agofrom:8cb03ecb80. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 19 2024
R-4.5-win	OK	Aug 19 2024
R-4.5-linux	OK	Aug 19 2024
R-4.4-win	OK	Aug 19 2024
R-4.4-mac	OK	Aug 19 2024
R-4.3-win	OK	Aug 19 2024
R-4.3-mac	OK	Aug 19 2024

Exports:bevertonholt coef confint diagn_scale fancyPVAmodel generateLatent gompertz model.select print.pvaModelSelect pva pva.llr ricker summary thetalogistic thetalogistic_D ts_index vcov

Dependencies:abind backports BH boot callr checkmate cli coda colorspace dclone dcmle desc distributional fansi farver generics ggplot2 glue gridExtra gtable inline isoband labeling lattice lifecycle loo magrittr MASS Matrix matrixStats mgcv munsell nlme numDeriv pillar pkgbuild pkgconfig posterior processx ps QuickJSR R2OpenBUGS R6 RColorBrewer Rcpp RcppEigen RcppParallel rjags rlang rstan scales StanHeaders tensorA tibble utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Population Viability Analysis with Data Cloning	PVAClone-package PVA Pva PVAClone pvaclone
Print fancy model names in summaries	fancyPVAmodel
Generate latent variable	generateLatent
Growth models	bevertonholt gompertz growthmodels ricker thetalogistic thetalogistic_D
Internal functions	internal-functions Internals internals PVAClone-internals ts_index
Model selection for 'pva' objects	model.select print.pvaModelSelect pva.llr
Paramecium abundance time series	paurelia
Population Viability Analysis	diagn_scale pva
Class '"pva"'	pva-class
Methods for 'pva' objects	coef,pva-method confint,pva-method summary,pva-method vcov,pva-method
Class '"pvamodel"'	pvamodel-class
Abundance time series of American Redstart	redstart
Abundance time series of Song Sparrow	songsparrow