Package: PVAClone 0.1-8

PVAClone: Population Viability Analysis with Data Cloning

Likelihood based population viability analysis in the presence of observation error and missing data. The package can be used to fit, compare, predict, and forecast various growth model types using data cloning.

Authors:Khurram Nadeem [aut], Peter Solymos [aut, cre]

PVAClone_0.1-8.tar.gz
PVAClone_0.1-8.zip(r-4.7)PVAClone_0.1-8.zip(r-4.6)PVAClone_0.1-8.zip(r-4.5)
PVAClone_0.1-8.tgz(r-4.6-any)PVAClone_0.1-8.tgz(r-4.5-any)
PVAClone_0.1-8.tar.gz(r-4.7-any)PVAClone_0.1-8.tar.gz(r-4.6-any)
PVAClone_0.1-8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PVAClone/json (API)

# Install 'PVAClone' in R:

install.packages('PVAClone', repos = c('https://psolymos.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/psolymos/pvaclone/issues

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
c++– GNU Standard C++ Library v3

Datasets:

paurelia - Paramecium abundance time series
redstart - Abundance time series of American Redstart
songsparrow - Abundance time series of Song Sparrow

On CRAN:

jags cpp

3.02 score 1 stars 21 scripts 280 downloads 17 exports 54 dependencies

Last updated from:ac221f9a3c. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	227
source / vignettes	OK	217
linux-release-x86_64	OK	233
macos-release-arm64	OK	186
macos-oldrel-arm64	OK	148
windows-devel	OK	253
windows-release	OK	186
windows-oldrel	OK	190
wasm-release	OK	131

Exports:bevertonholt coef confint diagn_scale fancyPVAmodel generateLatent gompertz model.select print.pvaModelSelect pva pva.llr ricker summary thetalogistic thetalogistic_D ts_index vcov

Dependencies:abind backports BH boot callr checkmate cli coda cpp11 dclone dcmle desc distributional farver generics ggplot2 glue gridExtra gtable inline isoband labeling lattice lifecycle loo magrittr Matrix matrixStats numDeriv pillar pkgbuild pkgconfig posterior processx ps QuickJSR R2OpenBUGS R6 RColorBrewer Rcpp RcppEigen RcppParallel rjags rlang rstan S7 scales StanHeaders tensorA tibble utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Population Viability Analysis with Data Cloning	PVAClone-package PVA Pva PVAClone pvaclone
Print fancy model names in summaries	fancyPVAmodel
Generate latent variable	generateLatent
Growth models	bevertonholt gompertz growthmodels ricker thetalogistic thetalogistic_D
Internal functions	internal-functions Internals internals PVAClone-internals ts_index
Model selection for 'pva' objects	model.select print.pvaModelSelect pva.llr
Paramecium abundance time series	paurelia
Population Viability Analysis	diagn_scale pva
Class '"pva"'	pva-class
Methods for 'pva' objects	coef,pva-method confint,pva-method summary,pva-method vcov,pva-method
Class '"pvamodel"'	pvamodel-class
Abundance time series of American Redstart	redstart
Abundance time series of Song Sparrow	songsparrow