{
  "_id": "6a4a270d4727062d5eca44d1",
  "Package": "PVAClone",
  "Type": "Package",
  "Title": "Population Viability Analysis with Data Cloning",
  "Version": "0.1-8",
  "Date": "2025-07-12",
  "Authors@R": "c(person(given = \"Khurram\",\nfamily = \"Nadeem\",\nrole = \"aut\"),\nperson(given = \"Peter\",\nfamily = \"Solymos\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7337-1740\"),\nemail = \"psolymos@gmail.com\"))",
  "Maintainer": "Peter Solymos <psolymos@gmail.com>",
  "Description": "Likelihood based population viability analysis in the\npresence of observation error and missing data. The package can\nbe used to fit, compare, predict, and forecast various growth\nmodel types using data cloning.",
  "License": "GPL-2",
  "SystemRequirements": "JAGS (>= 3.0.0)",
  "URL": "https://github.com/psolymos/PVAClone",
  "BugReports": "https://github.com/psolymos/PVAClone/issues",
  "LazyLoad": "yes",
  "LazyData": "true",
  "Config/pak/sysreqs": "make jags",
  "Repository": "https://psolymos.r-universe.dev",
  "Date/Publication": "2025-07-13 18:08:16 UTC",
  "RemoteUrl": "https://github.com/psolymos/PVAClone",
  "RemoteRef": "HEAD",
  "RemoteSha": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-08 08:51:22 UTC",
    "User": "root"
  },
  "Author": "Khurram Nadeem [aut],\nPeter Solymos [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-7337-1740>)",
  "_user": "psolymos",
  "_type": "src",
  "_file": "PVAClone_0.1-8.tar.gz",
  "_fileid": "https://r2.ropensci.org/99d0994a0589de9afef5cb129073e2047d6bce1cbfa4979d3abfff604d19e532",
  "_filesize": 227685,
  "_sha256": "99d0994a0589de9afef5cb129073e2047d6bce1cbfa4979d3abfff604d19e532",
  "_expires": "2026-10-13T09:42:35.000Z",
  "_created": "2026-06-08T08:51:22.000Z",
  "_published": "2026-07-05T09:42:37.243Z",
  "_jobs": [
    {
      "job": 85211759341,
      "time": 229,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7475587684"
    },
    {
      "job": 85211759148,
      "time": 221,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475584984"
    },
    {
      "job": 85211759016,
      "time": 170,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7475566483"
    },
    {
      "job": 85211759267,
      "time": 161,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475563142"
    },
    {
      "job": 85211758899,
      "time": 208,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475505092"
    },
    {
      "job": 85211759017,
      "time": 133,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475552631"
    },
    {
      "job": 85211759049,
      "time": 165,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7475564512"
    },
    {
      "job": 85211759178,
      "time": 150,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7475558458"
    },
    {
      "job": 85211759171,
      "time": 194,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7475574674"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177",
  "_status": "success",
  "_upstream": "https://github.com/psolymos/PVAClone",
  "_commit": {
    "id": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
    "author": "Peter Solymos <psolymos@gmail.com>",
    "committer": "Peter Solymos <psolymos@gmail.com>",
    "message": "Authors@R field in DESCRIPTION\n\nSigned-off-by: Peter Solymos <psolymos@gmail.com>\n",
    "time": 1752430096
  },
  "_maintainer": {
    "name": "Peter Solymos",
    "email": "psolymos@gmail.com",
    "login": "psolymos",
    "linkedin": "in/peter-solymos",
    "twitter": "@psolymos",
    "description": "Tech-bio-nerd",
    "uuid": 831636,
    "orcid": "0000-0001-7337-1740"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.15.0",
      "role": "Depends"
    },
    {
      "package": "dcmle",
      "version": ">= 0.3-0",
      "role": "Depends"
    },
    {
      "package": "dclone",
      "role": "Depends"
    },
    {
      "package": "stats4",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "coda",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Suggests"
    }
  ],
  "_owner": "psolymos",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-28",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "psolymos",
      "count": 32,
      "uuid": 831636
    }
  ],
  "_userbio": {
    "uuid": 831636,
    "type": "user",
    "name": "Peter Solymos",
    "description": "Tech-bio-nerd"
  },
  "_downloads": {
    "count": 170,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PVAClone"
  },
  "_devurl": "https://github.com/psolymos/pvaclone",
  "_searchresults": 21,
  "_topics": [
    "jags",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/PVAClone.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/psolymos/pvaclone",
  "_realowner": "psolymos",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1-0",
      "date": "2012-07-27"
    },
    {
      "version": "0.1-1",
      "date": "2012-08-25"
    },
    {
      "version": "0.1-2",
      "date": "2014-05-19"
    },
    {
      "version": "0.1-4",
      "date": "2016-01-14"
    },
    {
      "version": "0.1-5",
      "date": "2016-02-05"
    },
    {
      "version": "0.1-6",
      "date": "2016-03-12"
    },
    {
      "version": "0.1-7",
      "date": "2024-01-23"
    },
    {
      "version": "0.1-8",
      "date": "2025-07-13"
    }
  ],
  "_exports": [
    "bevertonholt",
    "coef",
    "confint",
    "diagn_scale",
    "fancyPVAmodel",
    "generateLatent",
    "gompertz",
    "model.select",
    "print.pvaModelSelect",
    "pva",
    "pva.llr",
    "ricker",
    "summary",
    "thetalogistic",
    "thetalogistic_D",
    "ts_index",
    "vcov"
  ],
  "_datasets": [
    {
      "name": "paurelia",
      "title": "Paramecium abundance time series",
      "object": "paurelia",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "redstart",
      "title": "Abundance time series of American Redstart",
      "object": "redstart",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "songsparrow",
      "title": "Abundance time series of Song Sparrow",
      "object": "songsparrow",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "PVAClone-package",
      "title": "Population Viability Analysis with Data Cloning",
      "topics": [
        "PVAClone-package",
        "PVA",
        "Pva",
        "PVAClone",
        "pvaclone"
      ]
    },
    {
      "page": "fancyPVAmodel",
      "title": "Print fancy model names in summaries",
      "topics": [
        "fancyPVAmodel"
      ]
    },
    {
      "page": "generateLatent",
      "title": "Generate latent variable",
      "topics": [
        "generateLatent"
      ]
    },
    {
      "page": "growthmodels",
      "title": "Growth models",
      "topics": [
        "bevertonholt",
        "gompertz",
        "growthmodels",
        "ricker",
        "thetalogistic",
        "thetalogistic_D"
      ]
    },
    {
      "page": "internals",
      "title": "Internal functions",
      "topics": [
        "internal-functions",
        "Internals",
        "internals",
        "PVAClone-internals",
        "ts_index"
      ]
    },
    {
      "page": "model.select",
      "title": "Model selection for 'pva' objects",
      "topics": [
        "model.select",
        "print.pvaModelSelect",
        "pva.llr"
      ]
    },
    {
      "page": "paurelia",
      "title": "Paramecium abundance time series",
      "topics": [
        "paurelia"
      ]
    },
    {
      "page": "pva",
      "title": "Population Viability Analysis",
      "topics": [
        "diagn_scale",
        "pva"
      ]
    },
    {
      "page": "pva-class",
      "title": "Class '\"pva\"'",
      "topics": [
        "pva-class"
      ]
    },
    {
      "page": "pva-methods",
      "title": "Methods for 'pva' objects",
      "topics": [
        "coef,pva-method",
        "confint,pva-method",
        "summary,pva-method",
        "vcov,pva-method"
      ]
    },
    {
      "page": "pvamodel-class",
      "title": "Class '\"pvamodel\"'",
      "topics": [
        "pvamodel-class"
      ]
    },
    {
      "page": "redstart",
      "title": "Abundance time series of American Redstart",
      "topics": [
        "redstart"
      ]
    },
    {
      "page": "songsparrow",
      "title": "Abundance time series of Song Sparrow",
      "topics": [
        "songsparrow"
      ]
    }
  ],
  "_readme": "https://github.com/psolymos/PVAClone/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "BH",
    "boot",
    "callr",
    "checkmate",
    "cli",
    "coda",
    "cpp11",
    "dclone",
    "dcmle",
    "desc",
    "distributional",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "inline",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "loo",
    "magrittr",
    "Matrix",
    "matrixStats",
    "numDeriv",
    "otel",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "posterior",
    "processx",
    "ps",
    "QuickJSR",
    "R2OpenBUGS",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "RcppParallel",
    "rjags",
    "rlang",
    "rstan",
    "S7",
    "scales",
    "StanHeaders",
    "tensorA",
    "tibble",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libjags",
      "package": "jags",
      "headers": "jags",
      "source": "jags",
      "version": "4.3.2-2.2404.0",
      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler.  It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary."
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 3.0211892990699383,
  "_indexed": true,
  "_nocasepkg": "pvaclone",
  "_universes": [
    "psolymos"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1-8",
      "date": "2026-06-08T08:54:14.000Z",
      "distro": "noble",
      "commit": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
      "fileid": "https://r2.ropensci.org/c4ab038fda5efdc1da7a542fbc1854b09efe052f4084cc493e2bc7018b96be7d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1-8",
      "date": "2026-06-08T08:53:56.000Z",
      "distro": "noble",
      "commit": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
      "fileid": "https://r2.ropensci.org/d504299df77eca765afbc36db6bbe0fe82f317f684e4e96ba8371ec41cff9085",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1-8",
      "date": "2026-06-08T08:53:20.000Z",
      "commit": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
      "fileid": "https://r2.ropensci.org/990491b34e025043bd2599c0e82826e608a9094d5354766f40578442dd76211e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1-8",
      "date": "2026-06-08T08:53:23.000Z",
      "commit": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
      "fileid": "https://r2.ropensci.org/39a6e3c629f00b3bfbd742c5fbc4b1e1da7073e9088af8fa48a60dfeecfe5170",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1-8",
      "date": "2026-06-08T08:53:58.000Z",
      "commit": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
      "fileid": "https://r2.ropensci.org/86f1efdab8eb2887f99173cffd2f349144e9edf64d645f64a852ad0428f5742c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1-8",
      "date": "2026-06-08T08:53:19.000Z",
      "commit": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
      "fileid": "https://r2.ropensci.org/38d93816461d817daea85e0ab51fc6d3b55047c90ae550af3788c2286017e3a4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1-8",
      "date": "2026-06-08T08:53:02.000Z",
      "commit": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
      "fileid": "https://r2.ropensci.org/f0b41850aabcb496116d536f07837e8268970babe7a85df97ee0085ef8b76fa1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1-8",
      "date": "2026-06-08T08:53:11.000Z",
      "commit": "ac221f9a3c67df0f17252e901f7ab075bf3fb3b1",
      "fileid": "https://r2.ropensci.org/e4d6484633448d052f39b67b1fd5ec5482719d7aa7a570adbb990daacc599faa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/psolymos/actions/runs/27126303177"
    }
  ]
}