Introduction | Components of detectability | Data and data processing | Variables | Phylogenetic correlations | Analysis | Variable screening for SR | Variable screening for DD | Mixed model selection | Profile likelihood for lambda | Leave-one-out (LOO) analysis | Parametric bootstrap | Prediction intervals | Results | Table with estimates and MSE | Tree with SR, DD, and trait values | Profile likelihood profiles for lambda | Bootstrap distributions of lambda | LOO cross validation plots | Mapping continuous traits on the tree
This package is hidden from search results because it is not hosted in the universe of the upstream owner
borealbirds. To fix this you can add URL: https://psolymos.r-universe.dev/lhreg to the package DESCRIPTION file. See also theR-universe documentation.Package: lhreg 0.2-1
lhreg: Phylogeny and Species Trait Effects on Detectability
Phylogeny and species trait effects on detectability, supporting material for the manuscript entitled 'Phylogeny and species traits predict songbird detectability' by Solymos, Matsuoka, Stralberg, Bayne, and Barker.
Authors:
lhreg_0.2-1.tar.gz
lhreg_0.2-1.zip(r-4.7)lhreg_0.2-1.zip(r-4.6)lhreg_0.2-1.zip(r-4.5)
lhreg_0.2-1.tgz(r-4.6-any)lhreg_0.2-1.tgz(r-4.5-any)
lhreg_0.2-1.tar.gz(r-4.7-any)lhreg_0.2-1.tar.gz(r-4.6-any)
lhreg_0.2-1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
lhreg/json (API)
| # Install 'lhreg' in R: |
| install.packages('lhreg', repos = c('https://psolymos.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/borealbirds/lhreg/issues
Datasets:
- cor_matrix - Phylogenetic Correlation Matrix
- lhreg_data - Life History Traits
birdsborealdetectabilityecologyphylogenyspecies-trait-effects
Last updated from:f26788efb8. Checks:7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 131 | ||
| source / vignettes | OK | 191 | ||
| linux-release-x86_64 | NOTE | 121 | ||
| macos-release-arm64 | NOTE | 106 | ||
| macos-oldrel-arm64 | NOTE | 163 | ||
| windows-devel | NOTE | 100 | ||
| windows-release | NOTE | 99 | ||
| windows-oldrel | NOTE | 96 | ||
| wasm-release | OK | 114 |
Exports:lhregloo1loo2parametric_bootstrappred_intprofile_lambda1
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Phylogenetic Correlation Matrix | cor_matrix |
| Phylogeny and Species Trait Effects on Detectability | lhreg logLik.lhreg loo1 loo2 parametric_bootstrap pred_int profile_lambda1 simulate.lhreg summary.lhreg |
| Life History Traits | lhreg_data |
