Package: dcmle 0.4-1

dcmle: Hierarchical Models Made Easy with Data Cloning

S4 classes around infrastructure provided by the 'coda' and 'dclone' packages to make package development easy as a breeze with data cloning for hierarchical models.

Authors:Peter Solymos [cre, aut]

dcmle_0.4-1.tar.gz
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dcmle.pdf |dcmle.html✨
dcmle/json (API)

# Install 'dcmle' in R:
install.packages('dcmle', repos = c('https://psolymos.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/datacloning/dcmle/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3

On CRAN:

47 exports 1.27 score 57 dependencies 2 dependents 66 scripts 351 downloads

Last updated 4 months agofrom:b639b2c9f3. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKAug 19 2024
R-4.5-winOKAug 19 2024
R-4.5-linuxOKAug 19 2024
R-4.4-winOKAug 19 2024
R-4.4-macOKAug 19 2024
R-4.3-winOKAug 19 2024
R-4.3-macOKAug 19 2024

Exports:acfplotautocorr.diagchanameschisq.diagcoefconfintcrosscorrcrosscorr.plotcumuplotdcdiagdcmledcsddctabledensityplotdensplotendfrequencygelman.diaggelman.plotgeweke.diagheidel.diaglambdamax.diagmakeDcFitmakeGsFitmcparnchainnclonesniternvarpairsplotqqmathquantileraftery.diagshowstackstartstrsummarythintimetraceplotupdatevarnamesvcovwindowxyplot

Dependencies:abindbackportsBHbootcallrcheckmateclicodacolorspacedclonedescdistributionalfansifarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR2OpenBUGSR6RColorBrewerRcppRcppEigenRcppParallelrjagsrlangrstanscalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Hierarchical Models Made Easy with Data Cloningdcmle-package
coda package related generic functionschanames varnames
Class '"codaMCMC"'acfplot,codaMCMC-method as.array,codaMCMC-method as.matrix,codaMCMC-method as.mcmc.list,codaMCMC-method autocorr.diag,codaMCMC-method chanames,codaMCMC-method chisq.diag,codaMCMC-method codaMCMC-class coef,codaMCMC-method coerce,codaMCMC,dcmle-method coerce,codaMCMC,MCMClist-method coerce,MCMClist,codaMCMC-method confint,codaMCMC-method crosscorr,codaMCMC-method crosscorr.plot,codaMCMC-method cumuplot,codaMCMC-method dcdiag,codaMCMC-method dcsd,codaMCMC-method dctable,codaMCMC-method densityplot,codaMCMC-method densplot,codaMCMC-method end,codaMCMC-method frequency,codaMCMC-method gelman.diag,codaMCMC-method gelman.plot,codaMCMC-method geweke.diag,codaMCMC-method head,codaMCMC-method heidel.diag,codaMCMC-method lambdamax.diag,codaMCMC-method mcpar,codaMCMC-method nchain,codaMCMC-method nclones,codaMCMC-method niter,codaMCMC-method nvar,codaMCMC-method pairs,codaMCMC-method plot,codaMCMC,missing-method qqmath,codaMCMC-method quantile,codaMCMC-method raftery.diag,codaMCMC-method show,codaMCMC-method stack,codaMCMC-method start,codaMCMC-method summary,codaMCMC-method tail,codaMCMC-method thin,codaMCMC-method time,codaMCMC-method traceplot,codaMCMC-method varnames,codaMCMC-method vcov,codaMCMC-method window,codaMCMC-method xyplot,codaMCMC-method [,codaMCMC-method [[,codaMCMC-method
Generic after similar coda functioncrosscorr.plot
Generic after similar coda functioncumuplot
Class '"custommodel"'custommodel-class
Class '"dcArgs"'dcArgs-class
Class '"dcCodaMCMC"'coerce,dcCodaMCMC,dcmle-method coerce,dcCodaMCMC,MCMClist-method coerce,MCMClist,dcCodaMCMC-method confint,dcCodaMCMC-method dcCodaMCMC-class dcdiag,dcCodaMCMC-method dctable,dcCodaMCMC-method nclones,dcCodaMCMC-method str,dcCodaMCMC-method summary,dcCodaMCMC-method [,codaMCMC,ANY,ANY,ANY-method [,dcCodaMCMC,ANY,ANY,ANY-method [,dcCodaMCMC-method [,dcmle,ANY,ANY,ANY-method [[,dcCodaMCMC-method
Class '"dcdiag"'dcdiag-class
Class '"dcDiag"'dcDiag-class
Class '"dcFit"'dcFit-class show,dcFit-method
Class '"dcFunction"'dcFunction-class
Class '"dcInits"'dcInits-class
Asymptotic maximum likelihood estimation with data cloningdcmle
Class '"dcmle"'acfplot,dcmle-method as.array,dcmle-method as.matrix,dcmle-method as.mcmc.list,dcmle-method autocorr.diag,dcmle-method chanames,dcmle-method chisq.diag,dcmle-method coef,dcmle-method coerce,dcmle,codaMCMC-method coerce,dcmle,dcCodaMCMC-method coerce,dcmle,MCMClist-method coerce,MCMClist,dcmle-method confint,dcmle-method crosscorr,dcmle-method crosscorr.plot,dcmle-method cumuplot,dcmle-method dcdiag,dcmle-method dcmle-class dcsd,dcmle-method dctable,dcmle-method densityplot,dcmle-method densplot,dcmle-method end,dcmle-method frequency,dcmle-method gelman.diag,dcmle-method gelman.plot,dcmle-method geweke.diag,dcmle-method head,dcmle-method heidel.diag,dcmle-method lambdamax.diag,dcmle-method mcpar,dcmle-method nchain,dcmle-method nclones,dcmle-method niter,dcmle-method nvar,dcmle-method pairs,dcmle-method plot,dcmle,missing-method qqmath,dcmle-method quantile,dcmle-method raftery.diag,dcmle-method show,dcmle-method stack,dcmle-method start,dcmle-method str,dcmle-method summary,dcmle-method tail,dcmle-method thin,dcmle-method time,dcmle-method traceplot,dcmle-method update,dcmle-method varnames,dcmle-method vcov,dcmle-method window,dcmle-method xyplot,dcmle-method [,dcmle-method [[,dcmle-method
Class '"dcModel"'dcModel-class
Class '"dcParams"'dcParams-class
Class '"dctable"'dctable-class
Class '"dcTable"'dcTable-class
Diagnostic functions set as genericgelman.diag gelman.plot geweke.diag heidel.diag raftery.diag
Class '"gsFit"'gsFit-class show,gsFit-method
Data object creatorsmakeDcFit makeGsFit
Class '"mcmc"'mcmc-class
Class '"mcmc.list"'mcmc.list-class
Class '"mcmc.list.dc"'mcmc.list.dc-class
Class '"MCMClist"'acfplot,MCMClist-method autocorr.diag,MCMClist-method chanames,MCMClist-method chisq.diag,MCMClist-method confint,MCMClist-method crosscorr,MCMClist-method crosscorr.plot,MCMClist-method cumuplot,MCMClist-method densityplot,MCMClist-method densplot,MCMClist-method frequency,MCMClist-method gelman.diag,MCMClist-method gelman.plot,MCMClist-method geweke.diag,MCMClist-method heidel.diag,MCMClist-method lambdamax.diag,MCMClist-method MCMClist-class mcpar,MCMClist-method nchain,MCMClist-method niter,MCMClist-method nvar,MCMClist-method pairs,MCMClist-method plot,MCMClist,missing-method qqmath,MCMClist-method quantile,MCMClist-method raftery.diag,MCMClist-method thin,MCMClist-method traceplot,MCMClist-method varnames,MCMClist-method xyplot,MCMClist-method
Class '"nClones"'nClones-class
Class '"summary.codaMCMC"'show,summary.codaMCMC-method summary.codaMCMC-class
Class '"summary.dcCodaMCMC"'show,summary.dcCodaMCMC-method summary.dcCodaMCMC-class
Class '"summary.dcmle"'show,summary.dcmle-method summary.dcmle-class