Package: bSims 0.3-2
bSims: Agent-Based Bird Point Count Simulator
A highly scientific and utterly addictive bird point count simulator to test statistical assumptions, aid survey design, and have fun while doing it (Solymos 2024 <doi:10.1007/s42977-023-00183-2>). The simulations follow time-removal and distance sampling models based on Matsuoka et al. (2012) <doi:10.1525/auk.2012.11190>, Solymos et al. (2013) <doi:10.1111/2041-210X.12106>, and Solymos et al. (2018) <doi:10.1650/CONDOR-18-32.1>, and sound attenuation experiments by Yip et al. (2017) <doi:10.1650/CONDOR-16-93.1>.
Authors:
bSims_0.3-2.tar.gz
bSims_0.3-2.zip(r-4.5)bSims_0.3-2.zip(r-4.4)bSims_0.3-2.zip(r-4.3)
bSims_0.3-2.tgz(r-4.4-any)bSims_0.3-2.tgz(r-4.3-any)
bSims_0.3-2.tar.gz(r-4.5-noble)bSims_0.3-2.tar.gz(r-4.4-noble)
bSims_0.3-2.tgz(r-4.4-emscripten)bSims_0.3-2.tgz(r-4.3-emscripten)
bSims.pdf |bSims.html✨
bSims/json (API)
NEWS
| # Install 'bSims' in R: |
| install.packages('bSims', repos = c('https://psolymos.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/psolymos/bsims/issues
biasbirdsdetectabilityshinysimulationsurvey-design
Last updated 7 months agofrom:641f07daa4. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 17 2024 |
| R-4.5-win | OK | Dec 17 2024 |
| R-4.5-linux | OK | Dec 17 2024 |
| R-4.4-win | OK | Dec 17 2024 |
| R-4.4-mac | OK | Dec 17 2024 |
| R-4.3-win | OK | Dec 17 2024 |
| R-4.3-mac | OK | Dec 17 2024 |
Exports:.bsims_allacceptrejectbsims_allbsims_animatebsims_detectbsims_initbsims_populatebsims_transcribecol2hexdist_fun2estimateeventsexpand_listget_abundanceget_densityget_detectionsget_eventsget_nestsget_tablerlnorm2rmvnrun_apptimetoevent
Dependencies:deldirfpCompareintrvallatticeMASSMatrixmefa4pbapply
Introduction to the bSims package
Rendered frombsims01-intro.Rmdusingknitr::rmarkdownon Dec 17 2024.Last update: 2024-05-21
Started: 2021-01-20
Simulation layers in bSims
Rendered frombsims02-layers.Rmdusingknitr::rmarkdownon Dec 17 2024.Last update: 2024-05-21
Started: 2021-01-20
Simulation workflow in bSims
Rendered frombsims03-workflow.Rmdusingknitr::rmarkdownon Dec 17 2024.Last update: 2024-05-21
Started: 2021-01-20
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Spatial point process simulator | acceptreject |
| bSims simulation functions | bSims-package bSims bsims_all bsims_animate bsims_detect bsims_init bsims_populate bsims_transcribe print.bsims_all print.bsims_detections print.bsims_events print.bsims_landscape print.bsims_population print.bsims_transcript |
| Distance function with segmented attenuation | dist_fun2 |
| Estimate basic parameters | estimate estimate.bsims_transcript |
| Event time simulator | events timetoevent |
| Create a list from all combinations of arguments | expand_list |
| Access nests, events, detections, and totals | get_abundance get_abundance.bsims_population get_density get_density.bsims_population get_detections get_detections.bsims_detections get_events get_events.bsims_events get_nests get_nests.bsims_population get_table get_table.bsims_transcript |
| Plot methods | col2hex lines.bsims_detections lines.bsims_events lines.bsims_transcript plot.bsims_detections plot.bsims_detections_table plot.bsims_events plot.bsims_events_table plot.bsims_landscape plot.bsims_population plot.bsims_transcript points.bsims_detections points.bsims_events points.bsims_population |
| Reparametrized lognormal distribution | rlnorm2 |
| Multivariate normal distribution | rmvn |
| Run Shiny apps | run_app |
