Package: EDMAinR 0.3-0
EDMAinR: Euclidean Distance Matrix Analysis in R
A coordinate-free approach for comparing biological shapes using landmark data based on Lele and Richtsmeier (1991) <doi:10.1002/ajpa.1330860307>.
Authors:
EDMAinR_0.3-0.tar.gz
EDMAinR_0.3-0.zip(r-4.5)EDMAinR_0.3-0.zip(r-4.4)EDMAinR_0.3-0.zip(r-4.3)
EDMAinR_0.3-0.tgz(r-4.4-any)EDMAinR_0.3-0.tgz(r-4.3-any)
EDMAinR_0.3-0.tar.gz(r-4.5-noble)EDMAinR_0.3-0.tar.gz(r-4.4-noble)
EDMAinR_0.3-0.tgz(r-4.4-emscripten)EDMAinR_0.3-0.tgz(r-4.3-emscripten)
EDMAinR.pdf |EDMAinR.html✨
EDMAinR/json (API)
NEWS
| # Install 'EDMAinR' in R: |
| install.packages('EDMAinR', repos = c('https://psolymos.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/psolymos/edmainr/issues
comparing-biological-shapescoordinate-freelandmark-datamorphometricsmultivariate-statistics
Last updated 1 years agofrom:4815a57911. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 04 2024 |
| R-4.5-win | NOTE | Sep 04 2024 |
| R-4.5-linux | NOTE | Sep 04 2024 |
| R-4.4-win | NOTE | Sep 04 2024 |
| R-4.4-mac | NOTE | Sep 04 2024 |
| R-4.3-win | OK | Sep 04 2024 |
| R-4.3-mac | OK | Sep 04 2024 |
Exports:.edma_fit_np.gpa_fit.Ttest_dataas.edma_datacombine_datacombine_data4dimensionsdimensions<-edma_colorsedma_fdmedma_fdm_reportedma_fitedma_gdmedma_gdm_reportedma_gmedma_scaleedma_sdmedma_simulate_dataget_fdmget_fmget_gdmget_gmget_influenceget_sdmglobal_testgpa_fitlandmarkslandmarks<-Meanformplot_2dplot_3dplot_ciplot_clustplot_edma_colorsplot_ordplot_testplot_Ztestread_xyzSigmaKstarspecimensspecimens<-write_xyzZ_test
Dependencies:apebase64encbslibcachemcellrangerclicpp11crayondigestevaluatefansifastmapfontawesomefsgluehighrhmshtmltoolshtmlwidgetsjquerylibjsonliteknitrlatticelifecyclemagrittrMASSmemoisemimeminpack.lmnlmepbapplypillarpkgconfigprettyunitsprogressR6rappdirsRcppreadxlrematchrglrlangrmarkdownsassscatterplot3dshapestibbletinytexutf8vctrsxfunyaml
EDMA data
Rendered fromedma01-data.Rmdusingknitr::rmarkdownon Sep 04 2024.Last update: 2023-08-21
Started: 2019-12-27
EDMA form difference matrix
Rendered fromedma03-form-difference.Rmdusingknitr::rmarkdownon Sep 04 2024.Last update: 2021-11-05
Started: 2020-11-15
EDMA form matrix
Rendered fromedma02-form.Rmdusingknitr::rmarkdownon Sep 04 2024.Last update: 2020-07-05
Started: 2019-12-27
EDMA growth matrix
Rendered fromedma04-growth.Rmdusingknitr::rmarkdownon Sep 04 2024.Last update: 2021-11-05
Started: 2020-11-15
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Euclidean Distance Matrix Analysis in R | EDMAinR-package EDMAinR |
| Check and manipulate colors | edma_colors plot_edma_colors |
| Functions for EDMA data objects | as.array.edma_data as.data.frame.edma_data as.dist.edma_data as.edma_data as.edma_data.array as.matrix.edma_data combine_data combine_data4 dim.edma_data dimensions dimensions.edma_data dimensions<- dimnames.edma_data edma_simulate_data landmarks landmarks.edma_data landmarks<- plot.edma_data plot_2d plot_2d.edma_data plot_clust plot_clust.edma_data plot_ord plot_ord.edma_data print.edma_data read_xyz specimens specimens.edma_data specimens<- stack.edma_data subset.edma_data write_xyz [.edma_data |
| Form difference | confint.edma_dm dimensions.edma_fdm edma_fdm get_fdm get_fdm.edma_fdm get_influence get_influence.edma_dm global_test global_test.edma_fdm landmarks.edma_fdm plot.edma_dm plot.edma_influence plot_2d.edma_dm plot_3d.edma_dm plot_ci plot_ci.edma_fdm plot_clust.edma_fdm plot_ord.edma_fdm plot_test plot_test.edma_dm print.edma_fdm |
| Nonparametric EDMA fit | as.dist.edma_fit as.edma_data.edma_fit confint.edma_fit edma_fit get_fm get_fm.edma_fit Meanform Meanform.edma_fit plot.edma_fit plot_2d.edma_fit plot_3d plot_3d.edma_fit plot_clust.edma_fit plot_ord.edma_fit print.edma_fit_np SigmaKstar SigmaKstar.edma_fit stack.dist |
| Growth difference | dimensions.edma_gdm edma_gdm edma_gm get_gdm get_gdm.edma_gdm get_gm get_gm.edma_gm global_test.edma_gdm global_test.edma_gm landmarks.edma_gdm plot_ci.edma_gdm plot_ci.edma_gm plot_clust.edma_gdm plot_ord.edma_gdm print.edma_gdm print.edma_gm |
| Scale an EDMA data object | edma_scale |
| Shape difference | confint.edma_sdm dimensions.edma_sdm edma_sdm get_influence.edma_sdm get_sdm get_sdm.edma_sdm landmarks.edma_sdm plot_ci.edma_sdm plot_Ztest plot_Ztest.edma_sdm print.edma_sdm Z_test Z_test.edma_sdm |
| GPA | gpa_fit print.gpa_fit |
| EDMA Report | edma_fdm_report edma_gdm_report |
